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SNPsyn - description text

Data

dictyExpress provides access to the Dictyostelium expression data published by the Functional Genomics Project at Baylor College of Medicine. The expressions were observed at over 20 different Dictyostelium strains at various stages of development.

Microarray Data (D. discoideum only)

The table below shows the number of chips (replications) for each strain at specific timepoint (hours).

Download microarray data

Strain/Timepoint
0
2
4
6
8
10
12
14
16
18
20
22
24
26
28
30
32
34
36
Total
acaA-
3
3
3
3
3
3
3
3
3
3
3
3
36
acaA- pkaCO/E
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
34
AX4
11
7
11
7
10
10
10
11
9
10
11
11
8
126
comA-
2
2
2
2
2
2
2
2
2
2
2
2
2
26
comB-
2
2
2
2
2
2
2
1
2
2
2
2
2
25
comC1B
3
4
4
4
4
4
4
4
4
4
4
4
4
51
lagC-
4
4
3
4
4
4
4
4
4
4
4
4
4
51
lagC2-
4
4
4
4
4
4
4
4
4
4
4
4
4
52
mek1-
6
6
6
6
24
mek1-pp4c-
6
6
6
6
24
mek1-smkA-
6
6
6
6
24
pkaC-
4
4
3
4
4
4
4
4
4
4
4
4
4
51
pkaR-
5
5
3
5
4
5
5
5
5
5
5
5
5
62
pkaR-regA-
5
4
5
4
5
4
5
2
5
4
4
4
4
55
pp4c-
6
6
6
6
24
pspA::Rm
2
1
2
2
2
2
2
2
2
1
1
2
2
2
2
27
pufA-
5
5
5
5
5
5
4
3
5
4
5
5
5
61
pufA-pkaC-
1
2
2
2
2
2
2
2
2
2
2
2
2
25
pufA-pkaR-
4
3
4
3
4
4
4
4
3
4
3
2
4
46
regA-
6
6
6
6
6
5
6
6
6
6
6
6
4
75
RegA-pspsA
3
3
2
3
3
3
3
3
3
3
3
2
2
36
smkA-
6
6
6
6
24
tagA-
3
3
3
3
2
3
3
3
3
3
3
3
2
34
yakA-
2
2
2
2
2
2
2
2
2
2
2
2
2
26
yakA-pufA-
3
3
3
3
3
2
3
3
3
3
3
3
3
38
  Total: 1057

RNA-Seq

RNA-Seq data were collected from D. discoideum and D. purpureum after growth on bacteria. Cell-types were separated by Percoll gradients. The tables below show the number of sequencing runs (replications) for each experiment.

Species/Timepoint 0 4 8 12 16 20 24 Total
D. discoideum 2 2 2 2 2 2 2 14
D. purpureum 2 2 2 2 2 2 2 14

Species/Cell Type pre-spore pre-stalk Total
D. discoideum 2 2 4
D. purpureum 2 2 4

Everyone is welcome to explore and use the RNA-seq data. The complete datasets, including the raw data, the analyzed data, and the code used to perform the analysis are available here. Raw data is also available from this server.

Summary